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Species belonging to selected taxon:

Caenorhabditis remanei



ABOUT THIS RECORD

ID: MNEST038502
species: Caenorhabditis remanei
miRNA family: mir-39
source: miRBase, original name: crm-mir-39 (MI0011021)

Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACCGGGTATGAATCAGTTAG

miRNA*
AACTGTTTCTTTCCCCGGTAATA

mismatches: 6
bulges: 1

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pre-miRNA
TGAGATCCAGAGAGCCCAACTGTTTCTTTCCCCGGTAATAAACTTCAACACGACTATCACCGGGTATGAATCAGTTAGGCTCTTCTGGTATCTT

dot-bracket secondary structure
.(((((((((((((((.(((((.(((....((((((.(((..(........)..))).))))))...))).))))).))))).))))).)))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-36: 2e-45

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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